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exbD protein (Idiomarina loihiensis) - STRING interaction network
"exbD" - Biopolymer transport protein in Idiomarina loihiensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
exbDBiopolymer transport protein (142 aa)    
Predicted Functional Partners:
IL1083
TonB system biopolymer transport component (236 aa)
 
  0.999
tolB
Translocation protein TolB; Involved in the TonB-independent uptake of proteins (449 aa)
 
   
  0.976
pal
Peptidoglycan-associated lipoprotein (178 aa)
 
 
  0.928
IL1084
Thioesterase (136 aa)
   
 
  0.924
IL2118
TonB system biopolymer transport component (459 aa)
 
  0.902
IL1858
TonB system biopolymer transport component (455 aa)
 
  0.902
tolA
TolA-like protein (267 aa)
 
 
  0.900
IL2115
Periplasmic protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins (202 aa)
   
  0.893
IL1855
TonB-like periplasmic protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins (203 aa)
   
  0.892
IL1857
TonB system biopolymer transport component (174 aa)
   
  0.884
Your Current Organism:
Idiomarina loihiensis
NCBI taxonomy Id: 283942
Other names: I. loihiensis, I. loihiensis L2TR, Idiomarina loihiensis, Idiomarina loihiensis Donachie et al. 2003, Idiomarina loihiensis L2TR, Idiomarina loihiensis str. L2TR, Idiomarina loihiensis strain L2TR
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