STRINGSTRING
slpA protein (Idiomarina loihiensis) - STRING interaction network
"slpA" - FKBP-type peptidylprolyl isomerase in Idiomarina loihiensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
slpAFKBP-type peptidylprolyl isomerase (146 aa)    
Predicted Functional Partners:
ileS
Isoleucyl-tRNA synthetase; Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as ’pretransfer’ editing and involves the hydrolysis of activated Val-AMP. The other activity is designated ’posttransfer’ editing and involves deacylation of mischarged Val-tRNA(Ile) (944 aa)
   
      0.910
IL1127
Lipoprotein signal peptidase; This protein specifically catalyzes the removal of signal peptides from prolipoproteins (174 aa)
   
        0.900
ispH
4-Hydroxy-3-methylbut-2-enyl diphosphate reductase; Converts 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) (314 aa)
   
        0.844
ribF
FAD synthase (312 aa)
   
        0.838
mviN
MviN-like membrane protein; Involved in peptidoglycan biosynthesis. Transports lipid-linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane (520 aa)
              0.722
IL1635
Lipoprotein signal peptidase; This protein specifically catalyzes the removal of signal peptides from prolipoproteins (167 aa)
   
        0.457
rpsT
Ribosomal protein S20; Binds directly to 16S ribosomal RNA (86 aa)
   
        0.449
fabD
Malonyl CoA-ACP transacylase (306 aa)
   
        0.448
IL1241
Lipoprotein signal peptidase; This protein specifically catalyzes the removal of signal peptides from prolipoproteins (170 aa)
   
        0.429
IL0633
Lipoprotein signal peptidase; This protein specifically catalyzes the removal of signal peptides from prolipoproteins (170 aa)
   
        0.429
Your Current Organism:
Idiomarina loihiensis
NCBI taxonomy Id: 283942
Other names: I. loihiensis, I. loihiensis L2TR, Idiomarina loihiensis, Idiomarina loihiensis Donachie et al. 2003, Idiomarina loihiensis L2TR, Idiomarina loihiensis str. L2TR, Idiomarina loihiensis strain L2TR
Server load: low (8%) [HD]