STRINGSTRING
sfhB protein (Idiomarina loihiensis) - STRING interaction network
"sfhB" - Pseudouridylate synthase in Idiomarina loihiensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sfhBPseudouridylate synthase; Responsible for synthesis of pseudouridine from uracil (322 aa)    
Predicted Functional Partners:
IL1182
Hypothetical protein (237 aa)
   
        0.931
truB
tRNA pseudouridine 5S synthase; Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs (310 aa)
 
   
  0.894
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs (261 aa)
 
   
  0.891
IL1743
RNA pseudouridylate synthase-family protein (286 aa)
 
  0.881
IL1309
RNA pseudouridylate synthase-family protein (191 aa)
 
  0.835
der
GTPase EngA; GTPase that plays an essential role in the late steps of ribosome biogenesis (479 aa)
 
 
  0.820
coaD
Phosphopantetheine adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4’- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate (166 aa)
       
    0.804
ksgA
Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3’-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits (288 aa)
   
 
  0.775
clpB
ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones; Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE (857 aa)
   
        0.771
bamD
Competence lipoprotein ComL; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane (256 aa)
   
        0.769
Your Current Organism:
Idiomarina loihiensis
NCBI taxonomy Id: 283942
Other names: I. loihiensis, I. loihiensis L2TR, Idiomarina loihiensis, Idiomarina loihiensis Donachie et al. 2003, Idiomarina loihiensis L2TR, Idiomarina loihiensis str. L2TR, Idiomarina loihiensis strain L2TR
Server load: low (10%) [HD]