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speB protein (Idiomarina loihiensis) - STRING interaction network
"speB" - Agmatinase in Idiomarina loihiensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
speBAgmatinase (304 aa)    
Predicted Functional Partners:
speA
Arginine decarboxylase (636 aa)
   
  0.999
argD
Ornithine/acetylornithine aminotransferase (405 aa)
 
  0.894
argF
Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline (316 aa)
 
  0.836
hutI
Imidazolonepropionase (408 aa)
   
 
  0.830
IL1717
Amidohydrolase (1026 aa)
   
 
  0.813
IL2390
Xaa-Pro dipeptidase (424 aa)
   
 
  0.812
pfkA
6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis (344 aa)
              0.802
IL2000
Carboxynorspermidine decarboxylase; Catalyzes the decarboxylation of carboxynorspermidine and carboxyspermidine (377 aa)
 
 
  0.770
IL1716
Amidohydrolase (433 aa)
   
 
  0.761
IL0605
Hypothetical protein (1058 aa)
   
 
  0.761
Your Current Organism:
Idiomarina loihiensis
NCBI taxonomy Id: 283942
Other names: I. loihiensis, I. loihiensis L2TR, Idiomarina loihiensis, Idiomarina loihiensis Donachie et al. 2003, Idiomarina loihiensis L2TR, Idiomarina loihiensis str. L2TR, Idiomarina loihiensis strain L2TR
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