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speA protein (Idiomarina loihiensis) - STRING interaction network
"speA" - Arginine decarboxylase in Idiomarina loihiensis
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
speAArginine decarboxylase (636 aa)    
Predicted Functional Partners:
speB
Agmatinase (304 aa)
   
  0.999
IL1742
Peptidylarginine deiminase-like protein (349 aa)
 
   
  0.947
argH
Argininosuccinate lyase (620 aa)
     
 
  0.947
IL2317
Arginine N-succinyltransferase (340 aa)
         
    0.900
pfkA
6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis (344 aa)
              0.801
rpsT
Ribosomal protein S20; Binds directly to 16S ribosomal RNA (86 aa)
       
      0.800
rpmH
Ribosomal protein L34 (44 aa)
       
      0.725
IL1210
malate/L-lactate dehydrogenase (356 aa)
              0.606
IL1999
Catalase (399 aa)
 
     
  0.533
IL2000
Carboxynorspermidine decarboxylase; Catalyzes the decarboxylation of carboxynorspermidine and carboxyspermidine (377 aa)
 
     
  0.520
Your Current Organism:
Idiomarina loihiensis
NCBI taxonomy Id: 283942
Other names: I. loihiensis, I. loihiensis L2TR, Idiomarina loihiensis, Idiomarina loihiensis Donachie et al. 2003, Idiomarina loihiensis L2TR, Idiomarina loihiensis str. L2TR, Idiomarina loihiensis strain L2TR
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