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copB protein (Idiomarina loihiensis) - STRING interaction network
"copB" - Hypothetical protein in Idiomarina loihiensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
copBHypothetical protein (247 aa)    
Predicted Functional Partners:
sufI
Multicopper oxidase (587 aa)
 
   
  0.991
IL1237
Secreted metal-binding protein (163 aa)
 
     
  0.943
IL1231
Hypothetical protein (144 aa)
 
          0.885
IL1236
Sec-independent protein secretion pathway protein; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system (72 aa)
              0.834
copD
Copper export protein (281 aa)
 
          0.825
copC
Hypothetical protein (116 aa)
 
          0.812
IL1230
Amino acid transporter (436 aa)
 
          0.802
IL1238
Hypothetical protein (114 aa)
              0.616
IL0762
Copper-containing nitrite reductase (383 aa)
 
   
  0.566
IL1239
Hypothetical protein (66 aa)
              0.475
Your Current Organism:
Idiomarina loihiensis
NCBI taxonomy Id: 283942
Other names: I. loihiensis, I. loihiensis L2TR, Idiomarina loihiensis, Idiomarina loihiensis Donachie et al. 2003, Idiomarina loihiensis L2TR, Idiomarina loihiensis str. L2TR, Idiomarina loihiensis strain L2TR
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