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alkB protein (Idiomarina loihiensis) - STRING interaction network
"alkB" - Alkylated DNA repair protein in Idiomarina loihiensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
alkBAlkylated DNA repair protein (217 aa)    
Predicted Functional Partners:
IL1251
Cytochrome b561 family protein (176 aa)
              0.859
IL1250
Acetyltransferase (202 aa)
              0.859
IL1252
Hypothetical protein (96 aa)
              0.783
aidB
Acyl-CoA dehydrogenase (559 aa)
     
   
  0.619
ada
O6-methylguanine-DNA methyltransferase (280 aa)
   
   
  0.601
IL1253
Hypothetical protein; Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety (172 aa)
              0.580
alkA
3-methyladenine DNA glycosylase (197 aa)
   
   
  0.512
dnaK
Molecular chaperone DnaK; Acts as a chaperone (642 aa)
     
      0.443
hmgA
Homogentisate 1,2-dioxygenase (376 aa)
     
        0.430
IL1254
LysR family transcriptional regulator (281 aa)
              0.409
Your Current Organism:
Idiomarina loihiensis
NCBI taxonomy Id: 283942
Other names: I. loihiensis, I. loihiensis L2TR, Idiomarina loihiensis, Idiomarina loihiensis Donachie et al. 2003, Idiomarina loihiensis L2TR, Idiomarina loihiensis str. L2TR, Idiomarina loihiensis strain L2TR
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