STRINGSTRING
prc protein (Idiomarina loihiensis) - STRING interaction network
"prc" - Carboxy-terminal protease in Idiomarina loihiensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
prcCarboxy-terminal protease (685 aa)    
Predicted Functional Partners:
proQ
solute/DNA competence effector; RNA chaperone with significant RNA binding, RNA strand exchange and RNA duplexing activities (208 aa)
 
   
  0.936
IL1271
Signal protein (157 aa)
              0.879
IL1272
Hypothetical protein (96 aa)
              0.845
IL1270
Hypothetical protein (99 aa)
              0.845
IL1269
Zn-ribbon protein (109 aa)
              0.845
degS
Serine protease (349 aa)
 
   
  0.669
IL1277
Aminopeptidase (863 aa)
              0.631
degQ
Serine protease (451 aa)
   
   
  0.609
IL1275
SNF family Na(+)-dependent transporter (461 aa)
              0.579
IL1276
Na+/H+ antiporter (484 aa)
              0.568
Your Current Organism:
Idiomarina loihiensis
NCBI taxonomy Id: 283942
Other names: I. loihiensis, I. loihiensis L2TR, Idiomarina loihiensis, Idiomarina loihiensis Donachie et al. 2003, Idiomarina loihiensis L2TR, Idiomarina loihiensis str. L2TR, Idiomarina loihiensis strain L2TR
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