STRINGSTRING
bax protein (Idiomarina loihiensis) - STRING interaction network
"bax" - Peptidoglycan hydrolase in Idiomarina loihiensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
baxPeptidoglycan hydrolase (281 aa)    
Predicted Functional Partners:
IL1308
Hypothetical protein (251 aa)
              0.865
IL0251
Polysaccharide deacetylase (361 aa)
 
          0.760
IL1309
RNA pseudouridylate synthase-family protein (191 aa)
              0.632
IL0999
TPR repeat- / von Willebrand factor type A domain-containing protein (610 aa)
   
          0.473
hflD
Hypothetical protein (206 aa)
              0.470
mnmA
tRNA-specific 2-thiouridylase MnmA; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34 (371 aa)
              0.470
IL0603
Hypothetical protein (151 aa)
   
          0.468
IL1000
Hypothetical protein (576 aa)
   
          0.422
dedD
Hypothetical protein (181 aa)
   
          0.415
Your Current Organism:
Idiomarina loihiensis
NCBI taxonomy Id: 283942
Other names: I. loihiensis, I. loihiensis L2TR, Idiomarina loihiensis, Idiomarina loihiensis Donachie et al. 2003, Idiomarina loihiensis L2TR, Idiomarina loihiensis str. L2TR, Idiomarina loihiensis strain L2TR
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