STRINGSTRING
mnmA protein (Idiomarina loihiensis) - STRING interaction network
"mnmA" - tRNA-specific 2-thiouridylase MnmA in Idiomarina loihiensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mnmAtRNA-specific 2-thiouridylase MnmA; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34 (371 aa)    
Predicted Functional Partners:
dsrC
Sulfite reductase gamma subunit; Part of a sulfur-relay system (109 aa)
     
  0.962
gidA
NAD/FAD-utilizing enzyme apparently involved in cell division; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34 (631 aa)
 
 
  0.953
hflD
Hypothetical protein (206 aa)
   
   
  0.953
mnmE
ThdF; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34 (458 aa)
 
 
  0.945
purB
Adenylosuccinate lyase (457 aa)
   
   
  0.848
IL1309
RNA pseudouridylate synthase-family protein (191 aa)
   
   
  0.791
IL1313
Cupin (380 aa)
   
        0.790
IL2040
Cysteine sulfinate desulfinase (385 aa)
   
   
  0.748
ribF
FAD synthase (312 aa)
 
        0.745
trmD
tRNA-(guanine-N1)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs (252 aa)
 
   
  0.730
Your Current Organism:
Idiomarina loihiensis
NCBI taxonomy Id: 283942
Other names: I. loihiensis, I. loihiensis L2TR, Idiomarina loihiensis, Idiomarina loihiensis Donachie et al. 2003, Idiomarina loihiensis L2TR, Idiomarina loihiensis str. L2TR, Idiomarina loihiensis strain L2TR
Server load: low (5%) [HD]