STRINGSTRING
holB protein (Idiomarina loihiensis) - STRING interaction network
"holB" - DNA polymerase III subunit delta' in Idiomarina loihiensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
holBDNA polymerase III subunit delta’ (286 aa)    
Predicted Functional Partners:
dnaX
DNA polymerase III, gamma/tau subunits (681 aa)
 
0.998
dnaN
DNA polymerase sliding clamp subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3’ to 5’ exonuclease activity. The beta chain is required for initiation of replication once it is clamped onto DNA, it slides freely (bidirectional and ATP- independent) along duplex DNA (367 aa)
 
  0.997
holA
DNA polymerase III subunit delta (360 aa)
     
  0.997
IL1689
DNA polymerase III alpha subunit (1158 aa)
 
  0.996
polA
DNA polymerase I (921 aa)
   
  0.987
holC
DNA polymerase III chi subunit (149 aa)
     
  0.977
tmk
Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis (205 aa)
   
 
  0.959
dnaE2
DNA polymerase III alpha subunit; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase (1039 aa)
   
  0.950
dnaQ
DNA polymerase III subunit epsilon (235 aa)
   
  0.936
IL1420
DNA polymerase III subunit epsilon (248 aa)
     
  0.922
Your Current Organism:
Idiomarina loihiensis
NCBI taxonomy Id: 283942
Other names: I. loihiensis, I. loihiensis L2TR, Idiomarina loihiensis, Idiomarina loihiensis Donachie et al. 2003, Idiomarina loihiensis L2TR, Idiomarina loihiensis str. L2TR, Idiomarina loihiensis strain L2TR
Server load: low (3%) [HD]