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infC protein (Idiomarina loihiensis) - STRING interaction network
"infC" - Translation initiation factor 3 in Idiomarina loihiensis
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
infCTranslation initiation factor 3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins (181 aa)    
Predicted Functional Partners:
rplT
Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit (117 aa)
 
  0.993
rpsM
Ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P- sites (118 aa)
     
 
  0.993
rpsK
Ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome (129 aa)
     
  0.990
rpsI
Ribosomal protein S9 (130 aa)
 
  0.985
rpsB
Ribosomal protein S2 (242 aa)
 
  0.980
rpmI
Ribosomal protein L35 (65 aa)
   
 
  0.978
rpsE
Ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy (166 aa)
     
  0.967
rpsJ
Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes (103 aa)
   
  0.966
thrS
Threonyl-tRNA synthetase (638 aa)
   
 
  0.961
rpsC
Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation (226 aa)
     
 
  0.953
Your Current Organism:
Idiomarina loihiensis
NCBI taxonomy Id: 283942
Other names: I. loihiensis, I. loihiensis L2TR, Idiomarina loihiensis, Idiomarina loihiensis Donachie et al. 2003, Idiomarina loihiensis L2TR, Idiomarina loihiensis str. L2TR, Idiomarina loihiensis strain L2TR
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