STRINGSTRING
fur protein (Idiomarina loihiensis) - STRING interaction network
"fur" - Ferric uptake regulator in Idiomarina loihiensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
furFerric uptake regulator (148 aa)    
Predicted Functional Partners:
IL1477
Hypothetical protein (345 aa)
              0.859
fldA
Flavodoxin; Low-potential electron donor to a number of redox enzymes (177 aa)
   
   
  0.840
hemE
Uroporphyrinogen-III decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III (358 aa)
         
  0.834
sodB
Superoxide dismutase, Fe dependent; Destroys radicals which are normally produced within the cells and which are toxic to biological systems (193 aa)
   
 
  0.819
sodA
Superoxide dismutase, Mn dependent; Destroys radicals which are normally produced within the cells and which are toxic to biological systems (202 aa)
   
 
  0.819
fumC
Fumarase (460 aa)
         
  0.584
IL1474
Hypothetical protein (71 aa)
              0.532
polA
DNA polymerase I (921 aa)
 
   
  0.513
IL2576
AhpC/TSA family peroxiredoxin (181 aa)
   
   
  0.498
IL2342
AhpC/TSA family peroxiredoxin (209 aa)
   
   
  0.498
Your Current Organism:
Idiomarina loihiensis
NCBI taxonomy Id: 283942
Other names: I. loihiensis, I. loihiensis L2TR, Idiomarina loihiensis, Idiomarina loihiensis Donachie et al. 2003, Idiomarina loihiensis L2TR, Idiomarina loihiensis str. L2TR, Idiomarina loihiensis strain L2TR
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