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udk protein (Idiomarina loihiensis) - STRING interaction network
"udk" - Uridine kinase in Idiomarina loihiensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
udkUridine kinase (210 aa)    
Predicted Functional Partners:
cmk
Cytidylate kinase (241 aa)
     
 
  0.973
pyrH
Uridylate kinase; Catalyzes the reversible phosphorylation of UMP to UDP (245 aa)
   
 
  0.963
pyrF
Orotidine-5’-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5’- monophosphate (OMP) to uridine 5’-monophosphate (UMP) (231 aa)
     
 
  0.916
mazG
Pyrophosphatase MazG (257 aa)
   
 
    0.901
IL1535
Na(+)/nucleoside cotransporter (402 aa)
   
        0.867
IL2324
D-ribulose-5-phosphate 3-epimerase (224 aa)
   
 
  0.792
tadA
Cytosine/adenosine deaminase; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2) (150 aa)
   
    0.763
tdk
Thymidine kinase (193 aa)
   
   
  0.750
pyrG
CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen (545 aa)
   
 
  0.665
rpiA
Ribose 5-phosphate isomerase; Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate (223 aa)
     
 
    0.579
Your Current Organism:
Idiomarina loihiensis
NCBI taxonomy Id: 283942
Other names: I. loihiensis, I. loihiensis L2TR, Idiomarina loihiensis, Idiomarina loihiensis Donachie et al. 2003, Idiomarina loihiensis L2TR, Idiomarina loihiensis str. L2TR, Idiomarina loihiensis strain L2TR
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