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fecI protein (Idiomarina loihiensis) - STRING interaction network
"fecI" - DNA-directed RNA polymerase specialized sigma subunit in Idiomarina loihiensis
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fecIDNA-directed RNA polymerase specialized sigma subunit (196 aa)    
Predicted Functional Partners:
fecR
Iron-dicitrate sensor, membrane component (319 aa)
 
 
  0.990
IL1592
TonB dependent receptor for iron chelates (974 aa)
 
   
  0.928
IL1595
Hypothetical protein (485 aa)
 
          0.897
rseA
Negative regulator of sigma E activity; An anti-sigma factor for extracytoplasmic function (ECF) sigma factor sigma-E (RpoE). ECF sigma factors are held in an inactive form by an anti-sigma factor until released by regulated intramembrane proteolysis (RIP). RIP occurs when an extracytoplasmic signal triggers a concerted proteolytic cascade to transmit information and elicit cellular responses. The membrane-spanning regulatory substrate protein is first cut periplasmically (site-1 protease, S1P, DegS), then within the membrane itself (site-2 protease, S2P, RseP), while cytoplasmic prote [...] (195 aa)
   
 
  0.894
IL1596
Hypothetical protein (893 aa)
 
   
  0.842
IL2588
Hypothetical protein (693 aa)
   
   
  0.716
rseB
Negative regulator of sigma E activity (321 aa)
   
 
  0.711
IL0795
Outer membrane receptor for ferric siderophore (723 aa)
 
        0.656
chrR
Transcription negative regulator ChrR (225 aa)
     
 
  0.643
IL0065
Transcription negative regulator (215 aa)
     
 
  0.643
Your Current Organism:
Idiomarina loihiensis
NCBI taxonomy Id: 283942
Other names: I. loihiensis, I. loihiensis L2TR, Idiomarina loihiensis, Idiomarina loihiensis Donachie et al. 2003, Idiomarina loihiensis L2TR, Idiomarina loihiensis str. L2TR, Idiomarina loihiensis strain L2TR
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