STRINGSTRING
dcp protein (Idiomarina loihiensis) - STRING interaction network
"dcp" - Zn-dependent oligopeptidase in Idiomarina loihiensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dcpZn-dependent oligopeptidase (729 aa)    
Predicted Functional Partners:
ndh
NADH dehydrogenase, FAD-containing subunit (431 aa)
              0.590
thiF
Thiamine biosynthesis protein ThiF (252 aa)
   
      0.456
IL0327
Nucleic acid-binding protein (67 aa)
   
        0.453
IL1689
DNA polymerase III alpha subunit (1158 aa)
              0.444
htpX
Heat shock protein HtpX (287 aa)
     
      0.441
IL0984
Zn-dependent protease (278 aa)
     
      0.441
accA
AcetylCoA carboxylase, carboxytransferase component subunit alpha; Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA (318 aa)
              0.426
tilS
PP family ATPase; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine (448 aa)
              0.426
xthA
Exonuclease III (269 aa)
   
        0.404
Your Current Organism:
Idiomarina loihiensis
NCBI taxonomy Id: 283942
Other names: I. loihiensis, I. loihiensis L2TR, Idiomarina loihiensis, Idiomarina loihiensis Donachie et al. 2003, Idiomarina loihiensis L2TR, Idiomarina loihiensis str. L2TR, Idiomarina loihiensis strain L2TR
Server load: low (8%) [HD]