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rmuC protein (Idiomarina loihiensis) - STRING interaction network
"rmuC" - DNA recombination protein RmuC in Idiomarina loihiensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rmuCDNA recombination protein RmuC (447 aa)    
Predicted Functional Partners:
fumB
Fumarase B (507 aa)
              0.864
sfsA
SfsA (234 aa)
           
  0.709
pabB
P-aminobenzoate synthetase, component I (460 aa)
              0.624
IL1707
NUDIX family NTP pyrophosphohydrolase (204 aa)
              0.618
vsr
DNA mismatch endonuclease, patch repair protein (171 aa)
         
  0.518
tnsA
Transposon Tn7 transposition protein TnsA (275 aa)
           
  0.517
rfaH
Transcription antiterminator RfaH (165 aa)
           
  0.517
mutH
DNA mismatch repair protein; Sequence-specific endonuclease that cleaves unmethylated GATC sequences. It is involved in DNA mismatch repair (224 aa)
           
  0.517
sdaA
L-serine deaminase (457 aa)
              0.443
glnE
Glutamine synthetase; Adenylation and deadenylation of glutamate--ammonia ligase (948 aa)
           
  0.416
Your Current Organism:
Idiomarina loihiensis
NCBI taxonomy Id: 283942
Other names: I. loihiensis, I. loihiensis L2TR, Idiomarina loihiensis, Idiomarina loihiensis Donachie et al. 2003, Idiomarina loihiensis L2TR, Idiomarina loihiensis str. L2TR, Idiomarina loihiensis strain L2TR
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