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IL1936 protein (Idiomarina loihiensis) - STRING interaction network
"IL1936" - DNA-directed RNA polymerase specialized sigma subunit in Idiomarina loihiensis
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurence
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[Homology]
Score
IL1936DNA-directed RNA polymerase specialized sigma subunit (175 aa)    
Predicted Functional Partners:
IL1934
Hypothetical protein (319 aa)
 
          0.895
rseA
Negative regulator of sigma E activity; An anti-sigma factor for extracytoplasmic function (ECF) sigma factor sigma-E (RpoE). ECF sigma factors are held in an inactive form by an anti-sigma factor until released by regulated intramembrane proteolysis (RIP). RIP occurs when an extracytoplasmic signal triggers a concerted proteolytic cascade to transmit information and elicit cellular responses. The membrane-spanning regulatory substrate protein is first cut periplasmically (site-1 protease, S1P, DegS), then within the membrane itself (site-2 protease, S2P, RseP), while cytoplasmic prote [...] (195 aa)
   
 
  0.894
IL1935
Hypothetical protein (171 aa)
              0.862
fecR
Iron-dicitrate sensor, membrane component (319 aa)
   
 
  0.730
rseB
Negative regulator of sigma E activity (321 aa)
   
 
  0.711
chrR
Transcription negative regulator ChrR (225 aa)
     
 
  0.643
IL0065
Transcription negative regulator (215 aa)
     
 
  0.643
dnaB
Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins (464 aa)
     
      0.625
rlmB
rRNA methylase; Specifically methylates the ribose of guanosine 2251 in 23S rRNA (248 aa)
              0.558
rplI
Ribosomal protein L9; Binds to the 23S rRNA (150 aa)
              0.546
Your Current Organism:
Idiomarina loihiensis
NCBI taxonomy Id: 283942
Other names: I. loihiensis, I. loihiensis L2TR, Idiomarina loihiensis, Idiomarina loihiensis Donachie et al. 2003, Idiomarina loihiensis L2TR, Idiomarina loihiensis str. L2TR, Idiomarina loihiensis strain L2TR
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