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chaC protein (Idiomarina loihiensis) - STRING interaction network
"chaC" - Hypothetical protein in Idiomarina loihiensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
chaCHypothetical protein (189 aa)    
Predicted Functional Partners:
IL2324
D-ribulose-5-phosphate 3-epimerase (224 aa)
     
 
    0.554
IL1070
Hypothetical protein (325 aa)
   
          0.490
epd
D-erythrose 4-phosphate dehydrogenase; Catalyzes the NAD-dependent conversion of D-erythrose 4- phosphate to 4-phosphoerythronate (341 aa)
     
 
    0.464
IL2126
Glyceraldehyde-3-phosphate dehydrogenase (331 aa)
     
 
    0.464
gapC
Glyceraldehyde-3-phosphate dehydrogenase (481 aa)
     
 
    0.464
IL2170.1
Il-IS_1, transposase (343 aa)
              0.435
IL2392
Secreted protein containing HslJ-like protein (313 aa)
   
          0.400
Your Current Organism:
Idiomarina loihiensis
NCBI taxonomy Id: 283942
Other names: I. loihiensis, I. loihiensis L2TR, Idiomarina loihiensis, Idiomarina loihiensis Donachie et al. 2003, Idiomarina loihiensis L2TR, Idiomarina loihiensis str. L2TR, Idiomarina loihiensis strain L2TR
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