STRINGSTRING
IL2304 protein (Idiomarina loihiensis) - STRING interaction network
"IL2304" - RND family efflux transporter in Idiomarina loihiensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IL2304RND family efflux transporter (1032 aa)    
Predicted Functional Partners:
acrA
Acriflavin resistance protein A (384 aa)
 
  0.988
tolC
Outer membrane protein (461 aa)
  0.987
IL2305
HlyD family secretion protein (351 aa)
 
   
  0.982
IL0601
RND family efflux system membrane fusion protein (347 aa)
 
   
  0.865
acrB
Acriflavin resistance protein B (1033 aa)
   
   
 
0.837
IL1294
Hypothetical protein (359 aa)
 
   
  0.818
yajC
Preprotein translocase subunit YajC (111 aa)
       
      0.792
IL0466
RND efflux system membrane fusion protein (355 aa)
 
   
  0.749
rnd
Ribonuclease D; Exonuclease involved in the 3’ processing of various precursor tRNAs. Initiates hydrolysis at the 3’-terminus of an RNA molecule and releases 5’-mononucleotides (390 aa)
           
  0.715
IL1634
Outer membrane efflux protein (415 aa)
   
  0.655
Your Current Organism:
Idiomarina loihiensis
NCBI taxonomy Id: 283942
Other names: I. loihiensis, I. loihiensis L2TR, Idiomarina loihiensis, Idiomarina loihiensis Donachie et al. 2003, Idiomarina loihiensis L2TR, Idiomarina loihiensis str. L2TR, Idiomarina loihiensis strain L2TR
Server load: low (5%) [HD]