STRINGSTRING
prkB protein (Idiomarina loihiensis) - STRING interaction network
"prkB" - Phosphoribulokinase in Idiomarina loihiensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
prkBPhosphoribulokinase (299 aa)    
Predicted Functional Partners:
IL2324
D-ribulose-5-phosphate 3-epimerase (224 aa)
       
  0.882
rpiA
Ribose 5-phosphate isomerase; Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate (223 aa)
         
  0.764
slyX
Hypothetical protein (74 aa)
              0.634
IL2310
Hypothetical protein (331 aa)
              0.634
gatY
Fructose-1,6-bisphosphate aldolase (354 aa)
 
     
  0.628
tktA
Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate (666 aa)
         
  0.564
fbp
Fructose-1,6-bisphosphatase (327 aa)
 
     
  0.535
fkpA
FKBP-type peptidylprolyl isomerase (246 aa)
              0.483
epd
D-erythrose 4-phosphate dehydrogenase; Catalyzes the NAD-dependent conversion of D-erythrose 4- phosphate to 4-phosphoerythronate (341 aa)
         
  0.452
pgk
Phosphoglycerate kinase (393 aa)
         
  0.452
Your Current Organism:
Idiomarina loihiensis
NCBI taxonomy Id: 283942
Other names: I. loihiensis, I. loihiensis L2TR, Idiomarina loihiensis, Idiomarina loihiensis Donachie et al. 2003, Idiomarina loihiensis L2TR, Idiomarina loihiensis str. L2TR, Idiomarina loihiensis strain L2TR
Server load: low (2%) [HD]