STRINGSTRING
ptr protein (Idiomarina loihiensis) - STRING interaction network
"ptr" - Zn-dependent peptidase in Idiomarina loihiensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ptrZn-dependent peptidase (957 aa)    
Predicted Functional Partners:
IL0688
Periplasmic substrate-binding protein (280 aa)
   
          0.637
pepQ2
Proline dipeptidase; Splits dipeptides with a prolyl residue in the C- terminal position (438 aa)
   
      0.619
IL2335
Hypothetical protein (224 aa)
              0.616
IL2428
Secreted protein related to cyanophycinase CphE (558 aa)
   
          0.575
IL0223
Hypothetical protein (202 aa)
   
          0.575
IL2225
Hypothetical protein (261 aa)
   
          0.528
nifS
NifS (705 aa)
   
 
      0.522
pepQ1
Proline dipeptidase; Splits dipeptides with a prolyl residue in the C- terminal position (452 aa)
   
      0.518
seqA
Replication initiation regulator SeqA; Negative regulator of replication initiation, which contributes to regulation of DNA replication and ensures that replication initiation occurs exactly once per chromosome per cell cycle. Binds to pairs of hemimethylated GATC sequences in the oriC region, thus preventing assembly of replication proteins and re- initiation at newly replicated origins. Repression is relieved when the region becomes fully methylated (160 aa)
   
          0.467
IL0380
Hypothetical protein (619 aa)
   
          0.464
Your Current Organism:
Idiomarina loihiensis
NCBI taxonomy Id: 283942
Other names: I. loihiensis, I. loihiensis L2TR, Idiomarina loihiensis, Idiomarina loihiensis Donachie et al. 2003, Idiomarina loihiensis L2TR, Idiomarina loihiensis str. L2TR, Idiomarina loihiensis strain L2TR
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