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gdhA protein (Idiomarina loihiensis) - STRING interaction network
"gdhA" - Glutamate dehydrogenase in Idiomarina loihiensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gdhAGlutamate dehydrogenase (450 aa)    
Predicted Functional Partners:
gltB
Glutamate synthase subunit alpha (1488 aa)
   
  0.999
glnA
Glutamine synthetase (469 aa)
   
 
  0.983
IL1791
Aspartate aminotransferase (395 aa)
   
 
  0.974
IL0861
Isocitrate dehydrogenase (334 aa)
   
 
  0.970
gadB
Glutamate decarboxylase (549 aa)
     
 
  0.968
glsA
Glutaminase (318 aa)
         
  0.958
gltD
Glutamate synthase subunit beta (473 aa)
   
  0.951
IL1433
Monomeric isocitrate dehydrogenase (741 aa)
         
  0.951
sucA
2-oxoglutarate dehydrogenase E1 (935 aa)
     
  0.926
putA
Proline dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source (1055 aa)
   
 
  0.925
Your Current Organism:
Idiomarina loihiensis
NCBI taxonomy Id: 283942
Other names: I. loihiensis, I. loihiensis L2TR, Idiomarina loihiensis, Idiomarina loihiensis Donachie et al. 2003, Idiomarina loihiensis L2TR, Idiomarina loihiensis str. L2TR, Idiomarina loihiensis strain L2TR
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