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IL2354 protein (Idiomarina loihiensis) - STRING interaction network
"IL2354" - Major facilitator superfamily permease in Idiomarina loihiensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IL2354Major facilitator superfamily permease (441 aa)    
Predicted Functional Partners:
IL2357
Hypothetical protein (85 aa)
              0.815
pnuC
Nicotinamide mononucleotide transporter (208 aa)
              0.815
licA
LPS biosynthesis choline kinase (247 aa)
              0.815
IL2358
Hypothetical protein (709 aa)
              0.792
IL1070
Hypothetical protein (325 aa)
   
          0.643
IL2392
Secreted protein containing HslJ-like protein (313 aa)
   
          0.472
ubiD
3-polyprenyl-4-hydroxybenzoate decarboxylase; Catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol, an intermediate step in ubiquinone biosynthesis (490 aa)
              0.463
IL2359
FMN reductase (233 aa)
              0.463
rho
Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho’s RNA-dependent ATPase activity, and release of the mRNA from the DNA template (422 aa)
              0.462
IL1176
3’-5’ exonuclease (215 aa)
   
          0.453
Your Current Organism:
Idiomarina loihiensis
NCBI taxonomy Id: 283942
Other names: I. loihiensis, I. loihiensis L2TR, Idiomarina loihiensis, Idiomarina loihiensis Donachie et al. 2003, Idiomarina loihiensis L2TR, Idiomarina loihiensis str. L2TR, Idiomarina loihiensis strain L2TR
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