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licA protein (Idiomarina loihiensis) - STRING interaction network
"licA" - LPS biosynthesis choline kinase in Idiomarina loihiensis
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
licALPS biosynthesis choline kinase (247 aa)    
Predicted Functional Partners:
pnuC
Nicotinamide mononucleotide transporter (208 aa)
 
          0.883
IL2357
Hypothetical protein (85 aa)
              0.861
IL2358
Hypothetical protein (709 aa)
              0.835
IL2354
Major facilitator superfamily permease (441 aa)
              0.815
sodA
Superoxide dismutase, Mn dependent; Destroys radicals which are normally produced within the cells and which are toxic to biological systems (202 aa)
           
  0.517
ubiD
3-polyprenyl-4-hydroxybenzoate decarboxylase; Catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol, an intermediate step in ubiquinone biosynthesis (490 aa)
              0.484
IL2359
FMN reductase (233 aa)
              0.484
rho
Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho’s RNA-dependent ATPase activity, and release of the mRNA from the DNA template (422 aa)
              0.483
Your Current Organism:
Idiomarina loihiensis
NCBI taxonomy Id: 283942
Other names: I. loihiensis, I. loihiensis L2TR, Idiomarina loihiensis, Idiomarina loihiensis Donachie et al. 2003, Idiomarina loihiensis L2TR, Idiomarina loihiensis str. L2TR, Idiomarina loihiensis strain L2TR
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