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pnuC protein (Idiomarina loihiensis) - STRING interaction network
"pnuC" - Nicotinamide mononucleotide transporter in Idiomarina loihiensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pnuCNicotinamide mononucleotide transporter (208 aa)    
Predicted Functional Partners:
IL2358
Hypothetical protein (709 aa)
 
          0.956
IL2357
Hypothetical protein (85 aa)
 
          0.938
licA
LPS biosynthesis choline kinase (247 aa)
 
          0.883
IL2354
Major facilitator superfamily permease (441 aa)
              0.815
IL1854
Hypothetical protein (432 aa)
   
          0.565
ribD
Riboflavin-specific deaminase/reductase; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5’-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5’-phosphate (375 aa)
         
  0.555
rnk
Transcription elongation factor family protein (129 aa)
           
  0.555
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP (210 aa)
         
  0.526
dnaB
Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins (464 aa)
         
  0.525
dnaG
DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication (581 aa)
           
  0.519
Your Current Organism:
Idiomarina loihiensis
NCBI taxonomy Id: 283942
Other names: I. loihiensis, I. loihiensis L2TR, Idiomarina loihiensis, Idiomarina loihiensis Donachie et al. 2003, Idiomarina loihiensis L2TR, Idiomarina loihiensis str. L2TR, Idiomarina loihiensis strain L2TR
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