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betT protein (Idiomarina loihiensis) - STRING interaction network
"betT" - Choline-glycine betaine transporter in Idiomarina loihiensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
betTCholine-glycine betaine transporter (680 aa)    
Predicted Functional Partners:
betA
Choline dehydrogenase-like flavoprotein (508 aa)
 
   
  0.812
IL2387
Intracellular signaling protein (392 aa)
              0.614
IL0894
Hypothetical protein (187 aa)
       
      0.587
maoC
Acyl dehydratase (296 aa)
              0.574
IL1913
Hypothetical protein (470 aa)
 
          0.533
IL2424
Smr domain-containing protein (195 aa)
       
      0.499
htpX
Heat shock protein HtpX (287 aa)
     
      0.469
IL0984
Zn-dependent protease (278 aa)
     
      0.469
IL1992
Succinate-semialdehyde dehydrogenase (480 aa)
   
   
  0.438
gabD
Succinate-semialdehyde dehydrogenase (482 aa)
   
   
  0.438
Your Current Organism:
Idiomarina loihiensis
NCBI taxonomy Id: 283942
Other names: I. loihiensis, I. loihiensis L2TR, Idiomarina loihiensis, Idiomarina loihiensis Donachie et al. 2003, Idiomarina loihiensis L2TR, Idiomarina loihiensis str. L2TR, Idiomarina loihiensis strain L2TR
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