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capC protein (Idiomarina loihiensis) - STRING interaction network
"capC" - Capsular polyglutamate biosynthesis membrane protein CapC in Idiomarina loihiensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
capCCapsular polyglutamate biosynthesis membrane protein CapC (191 aa)    
Predicted Functional Partners:
capB
NAD-dependent epimerase/dehydratase (401 aa)
 
     
  0.974
IL2402
Hypothetical protein (383 aa)
 
          0.968
IL2143
Hypothetical protein (215 aa)
   
          0.735
copD
Copper export protein (281 aa)
   
          0.717
IL1285
Hypothetical protein (581 aa)
   
          0.715
damX
Hypothetical protein (519 aa)
   
          0.714
IL2429
ABC transporter substrate-binding protein (428 aa)
   
          0.714
IL2320
HD superfamily hydrolase (390 aa)
   
          0.713
IL1638
Efflux family outer membrane protein (416 aa)
   
          0.670
IL2399
Hypothetical protein (164 aa)
              0.635
Your Current Organism:
Idiomarina loihiensis
NCBI taxonomy Id: 283942
Other names: I. loihiensis, I. loihiensis L2TR, Idiomarina loihiensis, Idiomarina loihiensis Donachie et al. 2003, Idiomarina loihiensis L2TR, Idiomarina loihiensis str. L2TR, Idiomarina loihiensis strain L2TR
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