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IL2421 protein (Idiomarina loihiensis) - STRING interaction network
"IL2421" - Hypothetical protein in Idiomarina loihiensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IL2421Hypothetical protein (287 aa)    
Predicted Functional Partners:
IL2423
DNA-directed RNA polymerase specialized sigma factor (357 aa)
 
          0.591
cinA
Competence/damage-inducible protein (168 aa)
 
          0.569
sun
tRNA and rRNA cytosine-C5-methylase (442 aa)
 
        0.562
IL2422
Alpha/beta hydrolase (298 aa)
              0.536
plsC
1-acyl-sn-glycerol-3-phosphate acyltransferase (246 aa)
 
          0.534
rlmB
rRNA methylase; Specifically methylates the ribose of guanosine 2251 in 23S rRNA (248 aa)
 
        0.533
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP (210 aa)
 
   
  0.532
dapF
Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan (275 aa)
 
        0.523
kdtA
3-deoxy-D-manno-octulosonic-acid transferase (661 aa)
              0.495
spoU
rRNA methylase SpoU (226 aa)
 
        0.488
Your Current Organism:
Idiomarina loihiensis
NCBI taxonomy Id: 283942
Other names: I. loihiensis, I. loihiensis L2TR, Idiomarina loihiensis, Idiomarina loihiensis Donachie et al. 2003, Idiomarina loihiensis L2TR, Idiomarina loihiensis str. L2TR, Idiomarina loihiensis strain L2TR
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