STRINGSTRING
farR protein (Idiomarina loihiensis) - STRING interaction network
"farR" - succinyl-CoA synthetase operon transcriptional regulator in Idiomarina loihiensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
farRsuccinyl-CoA synthetase operon transcriptional regulator (233 aa)    
Predicted Functional Partners:
hutH
Histidine ammonia-lyase (511 aa)
 
   
  0.985
hutU
Urocanate hydratase (558 aa)
 
   
  0.979
hutI
Imidazolonepropionase (408 aa)
 
   
  0.962
IL0134
Histidine ammonia-lyase (515 aa)
   
   
  0.630
nadK
NAD kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2’-hydroxyl of the adenosine moiety of NAD to yield NADP (292 aa)
       
      0.554
IL0586
aminoacylase-2/carboxypeptidase-Z family hydrolase (427 aa)
       
      0.554
sdhD
Succinate dehydrogenase, hydrophobic anchor subunit; Membrane-anchoring subunit of succinate dehydrogenase (SDH) (115 aa)
 
          0.505
sdhB
Succinate dehydrogenase iron-sulfur subunit (237 aa)
     
      0.459
pdhR
Transcriptional regulator PdhR (248 aa)
   
 
 
  0.445
IL2390
Xaa-Pro dipeptidase (424 aa)
   
   
  0.432
Your Current Organism:
Idiomarina loihiensis
NCBI taxonomy Id: 283942
Other names: I. loihiensis, I. loihiensis L2TR, Idiomarina loihiensis, Idiomarina loihiensis Donachie et al. 2003, Idiomarina loihiensis L2TR, Idiomarina loihiensis str. L2TR, Idiomarina loihiensis strain L2TR
Server load: low (7%) [HD]