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rsmJ protein (Idiomarina loihiensis) - STRING interaction network
"rsmJ" - SAM-dependent methyltransferase in Idiomarina loihiensis
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rsmJSAM-dependent methyltransferase; Specifically methylates the guanosine in position 1516 of 16S rRNA (263 aa)    
Predicted Functional Partners:
dam
DNA adenine methylase (290 aa)
 
          0.876
IL2479
Flavoprotein (393 aa)
              0.862
IL2478
AhpC/TSA family peroxiredoxin (163 aa)
              0.861
elaA
Acetyltransferase (150 aa)
              0.859
damX
Hypothetical protein (519 aa)
              0.621
sohB
Peptidase S49 (332 aa)
   
          0.594
aroB
3-dehydroquinate synthase (357 aa)
              0.518
aroK
Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate (177 aa)
              0.488
IL0896
Hypothetical protein (125 aa)
   
          0.443
hemY
Hypothetical protein (387 aa)
   
        0.427
Your Current Organism:
Idiomarina loihiensis
NCBI taxonomy Id: 283942
Other names: I. loihiensis, I. loihiensis L2TR, Idiomarina loihiensis, Idiomarina loihiensis Donachie et al. 2003, Idiomarina loihiensis L2TR, Idiomarina loihiensis str. L2TR, Idiomarina loihiensis strain L2TR
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