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cspE protein (Idiomarina loihiensis) - STRING interaction network
"cspE" - Cold shock protein in Idiomarina loihiensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cspECold shock protein (69 aa)    
Predicted Functional Partners:
rhlB
ATP-dependent RNA helicase; DEAD-box RNA helicase involved in RNA degradation. Has RNA-dependent ATPase activity and unwinds double-stranded RNA (425 aa)
   
  0.859
srmB
ATP-dependent RNA helicase; DEAD-box RNA helicase involved in the assembly of the 50S ribosomal subunit at low temperature. Exhibits RNA-stimulated ATP hydrolysis and RNA unwinding activity (409 aa)
   
  0.859
rhlE
ATP-dependent RNA helicase (416 aa)
   
  0.859
dbpA
ATP-dependent RNA helicase (474 aa)
   
  0.859
dnaK
Molecular chaperone DnaK; Acts as a chaperone (642 aa)
       
  0.830
deaD
ATP-dependent RNA helicase (594 aa)
   
  0.827
IL1491
ATP-dependent RNA helicase (372 aa)
   
  0.827
hrpB
Helicase, ATP-dependent (820 aa)
       
  0.750
hrpA
Helicase, ATP-dependent (1309 aa)
       
  0.750
sodB
Superoxide dismutase, Fe dependent; Destroys radicals which are normally produced within the cells and which are toxic to biological systems (193 aa)
       
 
  0.684
Your Current Organism:
Idiomarina loihiensis
NCBI taxonomy Id: 283942
Other names: I. loihiensis, I. loihiensis L2TR, Idiomarina loihiensis, Idiomarina loihiensis Donachie et al. 2003, Idiomarina loihiensis L2TR, Idiomarina loihiensis str. L2TR, Idiomarina loihiensis strain L2TR
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