STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KOO48522.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (76 aa)    
Predicted Functional Partners:
KOO44041.1
Stage V sporulation protein AEB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.556
KOO44039.1
Stage V sporulation protein AC; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.539
KOO48523.1
Butanol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.537
KOO44043.1
Stage V sporulation protein AF; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.531
KOO47127.1
Spore protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.525
KOO44040.1
Stage V sporulation protein AD; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.502
KOO50343.1
Spore coat protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.491
KOO44088.1
Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.
  
     0.472
spoIIAB
Anti-sigma F factor; Binds to sigma F and blocks its ability to form an RNA polymerase holoenzyme (E-sigma F). Phosphorylates SpoIIAA on a serine residue. This phosphorylation may enable SpoIIAA to act as an anti- anti-sigma factor that counteracts SpoIIAB and thus releases sigma F from inhibition.
  
     0.466
KOO42336.1
Spore coat protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.454
Your Current Organism:
Bacillus koreensis
NCBI taxonomy Id: 284581
Other names: B. koreensis, Bacillus koreensis Lim et al. 2006, Bacillus sp. BR030, DSM 16467, KCTC 3914, strain BR030
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.