STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KOO46754.1Carbonic anhydrase; Derived by automated computational analysis using gene prediction method: Protein Homology. (187 aa)    
Predicted Functional Partners:
KOO50328.1
Transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.917
KOO46769.1
Transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.917
KOO43477.1
Sulfate transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.757
KOO46279.1
Formate/nitrite transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.738
KOO46288.1
Formate/nitrite transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.738
KOO50672.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.583
KOO47023.1
Cobalamin biosynthesis protein CobW; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.558
xpt
Xanthine phosphoribosyltransferase; Converts the preformed base xanthine, a product of nucleic acid breakdown, to xanthosine 5'-monophosphate (XMP), so it can be reused for RNA or DNA synthesis.
   
    0.542
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
   
    0.542
KOO46281.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.542
Your Current Organism:
Bacillus koreensis
NCBI taxonomy Id: 284581
Other names: B. koreensis, Bacillus koreensis Lim et al. 2006, Bacillus sp. BR030, DSM 16467, KCTC 3914, strain BR030
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.