STRINGSTRING
LOC1 protein (Candida glabrata) - STRING interaction network
"LOC1" - Hypothetical protein in Candida glabrata
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC1Hypothetical protein; Required for efficient assembly and nuclear export of the 60S ribosomal subunit (203 aa)    
Predicted Functional Partners:
XP_448939.1
Hypothetical protein (255 aa)
     
      0.882
XP_447221.1
Hypothetical protein (519 aa)
     
      0.857
XP_448896.1
Hypothetical protein (712 aa)
     
      0.855
RLP7
Hypothetical protein; Involved in the biogenesis of the 60S ribosomal subunit. May act as a specificity factor that binds precursor rRNAs and tethers the enzymes that carry out the early 5’ to 3’ exonucleolytic reactions that generate the mature rRNAs (By similarity) (317 aa)
     
      0.849
XP_448193.1
Hypothetical protein (671 aa)
     
      0.847
NOG1
Hypothetical protein; Involved in the biogenesis of the 60S ribosomal subunit (645 aa)
     
      0.834
HAS1
Hypothetical protein; ATP-dependent RNA helicase involved in 40S ribosomal subunit biogenesis. Required for the processing and cleavage of 35S pre-rRNA at sites A0, A1, and A2, leading to mature 18S rRNA (494 aa)
     
      0.834
SPB4
Hypothetical protein; ATP-binding RNA helicase involved in the biogenesis of 60S ribosomal subunits. Binds 90S pre-ribosomal particles and dissociates from pre-60S ribosomal particles after processing of 27SB pre-rRNA. Required for the normal formation of 18S rRNA through the processing of pre-rRNAs at sites A0, A1 and A2, and the normal formation of 25S and 5.8S rRNAs through the processing of pre-rRNAs at sites C1 and C2 (617 aa)
     
      0.831
XP_448146.1
Hypothetical protein (619 aa)
     
      0.829
XP_447732.1
Hypothetical protein (365 aa)
     
      0.822
Your Current Organism:
Candida glabrata
NCBI taxonomy Id: 284593
Other names: C. glabrata, C. glabrata CBS 138, Candida glabrata, Candida glabrata ATCC 2001, Candida glabrata ATCC2001, Candida glabrata CBS 138, Candida glabrata CBS138, Nakaseomyces, Torulopsis glabrata, m. Nakaseomyces, mitosporic Nakaseomyces
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