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SNU13 protein (Candida glabrata) - STRING interaction network
"SNU13" - Small nucleolar ribonucleoprotein SNU13 in Candida glabrata
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SNU13Small nucleolar ribonucleoprotein SNU13; Common component of the spliceosome and rRNA processing machinery. In association with the spliceosomal U4/U6.U5 tri-snRNP particle, required for splicing of pre-mRNA. In association with box C/D snoRNPs, required for processing of pre-ribosomal RNA (rRNA) and site-specific 2’-O-methylation of substrate RNAs. Essential for the accumulation and stability of U4 snRNA, U6 snRNA, and box C/D snoRNAs (By similarity) (126 aa)    
Predicted Functional Partners:
NOP58
Hypothetical protein; Required for pre-18S rRNA processing. May bind microtubules (By similarity) (513 aa)
     
  0.994
NOP1
rRNA methyltransferase NOP1; S-adenosyl-L-methionine-dependent methyltransferase that has the ability to methylate both RNAs and proteins. Involved in pre-rRNA processing. Utilizes the methyl donor S-adenosyl-L- methionine to catalyze the site-specific 2’-hydroxyl methylation of ribose moieties in pre-ribosomal RNA. Site specificity is provided by a guide RNA that base pairs with the substrate. Methylation occurs at a characteristic distance from the sequence involved in base pairing with the guide RNA. Also acts as a protein methyltransferase by mediating methylation of ’Gln-105’ of h [...] (323 aa)
     
  0.990
XP_446360.1
40S ribosomal protein S4 (261 aa)
     
  0.984
RPS1
40S ribosomal protein S1 (255 aa)
     
  0.982
XP_448200.1
40S ribosomal protein S3 (247 aa)
   
  0.979
XP_445285.1
Hypothetical protein (165 aa)
   
  0.978
XP_446494.1
Hypothetical protein (479 aa)
     
  0.978
RPS23
40S ribosomal protein S23 (145 aa)
   
  0.977
XP_448490.1
40S ribosomal protein S17 (136 aa)
     
  0.975
XP_446644.1
40S ribosomal protein S7 (188 aa)
     
  0.975
Your Current Organism:
Candida glabrata
NCBI taxonomy Id: 284593
Other names: C. glabrata, C. glabrata CBS 138, Candida glabrata, Candida glabrata ATCC 2001, Candida glabrata ATCC2001, Candida glabrata CBS 138, Candida glabrata CBS138, Nakaseomyces, Torulopsis glabrata, m. Nakaseomyces, mitosporic Nakaseomyces
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