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RAT1 protein (Candida glabrata) - STRING interaction network
"RAT1" - Hypothetical protein in Candida glabrata
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAT1Hypothetical protein; Possesses 5’->3’ exoribonuclease activity. Required for the processing of nuclear mRNA and rRNA precursors. May promote termination of transcription by RNA polymerase II (By similarity) (1018 aa)    
Predicted Functional Partners:
RAI1
Hypothetical protein; Ribonuclease that specifically degrades pre-mRNAs with a defective 5’ end cap and is part of a pre-mRNA capping quality control. Has decapping and pyrophosphohydrolase activities. Has decapping activity toward incomplete 5’ end cap mRNAs such as unmethylated 5’ end-capped RNA to release GpppN and 5’ end monophosphate RNA. Also possesses RNA 5’-pyrophosphohydrolase activity by hydrolyzing the 5’ end triphosphate to release pyrophosphates (By similarity) (400 aa)
     
 
  0.975
XP_445027.1
Hypothetical protein (206 aa)
     
  0.963
XP_449653.1
Hypothetical protein (838 aa)
     
  0.923
XP_446851.1
Hypothetical protein (392 aa)
     
 
  0.895
XP_448948.1
Hypothetical protein (968 aa)
     
  0.893
XP_449030.1
Hypothetical protein; Multifunctional protein that exhibits several independent functions at different levels of the cellular processes. 5’-3’ exonuclease component of the nonsense-mediated mRNA decay (NMD) which is a highly conserved mRNA degradation pathway, an RNA surveillance system whose role is to identify and rid cells of mRNA with premature termination codons and thus prevents accumulation of potentially harmful truncated proteins (1522 aa)
     
0.880
XP_446987.1
Hypothetical protein (1007 aa)
     
  0.838
XP_448939.1
Hypothetical protein (255 aa)
     
 
  0.824
XP_449016.1
Hypothetical protein (158 aa)
       
  0.819
XP_446514.1
Hypothetical protein (172 aa)
       
  0.818
Your Current Organism:
Candida glabrata
NCBI taxonomy Id: 284593
Other names: C. glabrata, C. glabrata CBS 138, Candida glabrata, Candida glabrata ATCC 2001, Candida glabrata ATCC2001, Candida glabrata CBS 138, Candida glabrata CBS138, Nakaseomyces, Torulopsis glabrata, m. Nakaseomyces, mitosporic Nakaseomyces
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