STRINGSTRING
Phatr10089 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr10089" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr10089Predicted protein (141 aa)    
Predicted Functional Partners:
Phatr11777
Serine/threonine-protein phosphatase (309 aa)
     
 
  0.771
Phatr11477
Serine/threonine-protein phosphatase (318 aa)
     
 
  0.771
Phatr2087
Thymidylate synthase (217 aa)
     
  0.693
Phatr48302
Predicted protein (549 aa)
       
  0.676
Phatr1690
Predicted protein (495 aa)
 
 
  0.650
Phatr3145
Predicted protein (324 aa)
     
 
  0.617
Phatr8876
Predicted protein (167 aa)
     
 
  0.560
Phatr12589
Predicted protein (213 aa)
     
 
  0.560
Phatr10005
Predicted protein (212 aa)
       
 
  0.544
CPS-II
Predicted protein (1542 aa)
         
  0.535
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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