STRINGSTRING
Phatr10102 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr10102" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr10102Predicted protein (214 aa)    
Predicted Functional Partners:
Phatr18735
Predicted protein (442 aa)
     
  0.971
Phatr10354
Predicted protein (653 aa)
     
  0.971
Phatr9231
Predicted protein (107 aa)
     
  0.896
Phatr42429
Predicted protein (625 aa)
     
  0.888
Phatr43176
Predicted protein (464 aa)
     
  0.869
Phatr9576
Predicted protein (254 aa)
     
  0.798
Phatr54813
Predicted protein (322 aa)
       
  0.711
RPN11
Regulatory proteasome non-atpase subunit 11 (311 aa)
     
      0.671
RPN8
Regulatory proteasome non-atpase subunit 8 (334 aa)
     
      0.671
PAS2
Ubiquitin carrier protein (168 aa)
       
 
  0.663
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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