STRINGSTRING
CDKD1 protein (Phaeodactylum tricornutum) - STRING interaction network
"CDKD1" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDKD1Predicted protein (304 aa)    
Predicted Functional Partners:
MAT1
Predicted protein (294 aa)
       
  0.975
ERCC2
Xeroderma pigmentosum group D complementing protein (782 aa)
     
  0.968
CYCL1
Predicted protein (193 aa)
     
  0.915
CYCH1
Predicted protein (272 aa)
       
  0.868
Phatr20574
Predicted protein (720 aa)
       
  0.855
Phatr15555
DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1706 aa)
       
  0.855
Phatr44306
Predicted protein (865 aa)
     
  0.853
Phatr44108
Predicted protein (358 aa)
     
  0.846
CYCB2
Predicted protein (64 aa)
       
  0.836
dsCYC3
Predicted protein (301 aa)
       
  0.836
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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