STRINGSTRING
Prk protein (Phaeodactylum tricornutum) - STRING interaction network
"Prk" - Phosphoribulokinase in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PrkPhosphoribulokinase (359 aa)    
Predicted Functional Partners:
RPE2
Ribulose-phosphate 3-epimerase (227 aa)
   
 
  0.968
Phatr13382
Predicted protein (244 aa)
     
 
  0.945
Phatr34898
Predicted protein (257 aa)
   
  0.913
Phatr26336
Predicted protein (179 aa)
   
  0.913
Rpe
Ribulose-phosphate 3-epimerase (260 aa)
   
 
  0.693
PGK
Phosphoglycerate kinase (448 aa)
   
   
  0.686
FBPC1
Fructose-1,6-bisphosphatase (376 aa)
   
   
  0.685
TPI/GapC3
Triosephosphate isomerase/glyceraldehyde-3-phosphate dehydrogenase (614 aa)
   
 
  0.676
FBPC4
Fructose-1,6-bisphosphatase (352 aa)
   
   
  0.662
FBP
Fructose-1,6-bisphosphatase (341 aa)
   
   
  0.647
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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