STRINGSTRING
Phatr10310 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr10310" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr10310Predicted protein (85 aa)    
Predicted Functional Partners:
Phatr12779
Predicted protein (89 aa)
   
  0.997
Phatr22597
Predicted protein (149 aa)
     
  0.988
Phatr25420
Predicted protein (228 aa)
     
  0.985
Phatrdraft955
DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1674 aa)
     
  0.985
RNAP-II_1
Predicted protein (319 aa)
     
  0.985
Phatr10148
Predicted protein (129 aa)
     
  0.984
Phatr13566
Predicted protein (320 aa)
     
  0.982
Phatr9235
DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1147 aa)
     
  0.980
Phatr10821
Predicted protein (73 aa)
     
  0.978
Phatr13281
Predicted protein; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly (181 aa)
     
        0.958
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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