STRINGSTRING
Phatr10398 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr10398" - Uridine kinase in Phaeodactylum tricornutum
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr10398Uridine kinase (209 aa)    
Predicted Functional Partners:
Phatr26336
Predicted protein (179 aa)
 
  0.973
Phatr34898
Predicted protein (257 aa)
   
  0.913
hNpl4
Predicted protein (473 aa)
 
   
      0.671
Phatr40163
Predicted protein (371 aa)
 
            0.626
Rpe
Ribulose-phosphate 3-epimerase (260 aa)
   
 
  0.617
RPE2
Ribulose-phosphate 3-epimerase (227 aa)
   
 
  0.617
Phatr12668
Predicted protein (213 aa)
   
 
  0.617
TPI/GapC3
Triosephosphate isomerase/glyceraldehyde-3-phosphate dehydrogenase (614 aa)
   
 
  0.596
Phatr50034
Predicted protein; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen (547 aa)
   
 
  0.551
PheRS
Phenylalanyl-trna synthetase class IIc family protein (405 aa)
   
   
  0.546
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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