STRINGSTRING
Phatr10479 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr10479" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr10479Predicted protein (300 aa)    
Predicted Functional Partners:
Phatr31816
Predicted protein (554 aa)
     
0.804
Rab7
Predicted protein (237 aa)
     
 
  0.654
Phatr40171
Predicted protein (364 aa)
     
 
  0.654
Phatr2845
Predicted protein (268 aa)
       
 
  0.651
Phatr10628
Predicted protein (575 aa)
       
 
  0.625
Ras1
Predicted protein (191 aa)
       
  0.578
ARL1
Predicted protein (184 aa)
       
  0.578
Arf1
Predicted protein (184 aa)
       
  0.578
Rab11
Predicted protein (214 aa)
       
  0.578
Rab2
Predicted protein (210 aa)
       
  0.578
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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