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STRINGSTRING
Phatr10479 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr10479" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr10479Predicted protein (300 aa)    
Predicted Functional Partners:
Phatr12157
Predicted protein (330 aa)
     
 
  0.868
Phatr55114
Predicted protein (617 aa)
     
   
  0.799
Phatrdraft1578
Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family (839 aa)
     
   
  0.727
Rab6
Predicted protein (236 aa)
     
 
  0.717
Phatr29967
Predicted protein (871 aa)
     
   
  0.667
Phatr9123
Predicted protein (52 aa)
     
 
  0.646
Phatr49795
Predicted protein (449 aa)
     
 
  0.611
Sec7D
Predicted protein (2168 aa)
     
 
  0.610
Phatr21791
Predicted protein (208 aa)
     
   
  0.597
Phatr8111
Protein yippee-like; Belongs to the yippee family (99 aa)
     
   
  0.585
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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