STRINGSTRING
Phatr10779 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr10779" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr10779Predicted protein (359 aa)    
Predicted Functional Partners:
Phatr20547
Homeobox protein (646 aa)
   
  0.981
Phatr44618
2-isopropylmalate synthase (663 aa)
   
  0.957
Phatr38362
2-isopropylmalate synthase (581 aa)
   
  0.957
Phatr22113
Bifunctional aspartokinase (870 aa)
   
  0.946
Phatr9476
Predicted protein (341 aa)
   
  0.939
Phatr11021
Predicted protein (323 aa)
     
  0.938
Phatr8765
Predicted protein (287 aa)
       
  0.929
Phatr49903
Predicted protein (654 aa)
       
  0.916
Phatr15917
Cystathionine gamma-lyase (392 aa)
       
  0.916
Phatr27240
Predicted protein (746 aa)
         
  0.900
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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