STRINGSTRING
Phatr10925 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr10925" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr10925Predicted protein (70 aa)    
Predicted Functional Partners:
Phatr19982
Predicted protein (2347 aa)
       
      0.817
Phatr9701
Predicted protein (125 aa)
     
      0.670
Phatr54743
Predicted protein (347 aa)
       
      0.661
Phatr15338
Predicted protein (169 aa)
       
      0.661
Phatr10122
Predicted protein (324 aa)
       
      0.661
Phatr20588
Predicted protein (87 aa)
     
        0.649
Phatr43211
Predicted protein (826 aa)
       
      0.624
MER3
Mer3 meiotic cross-over helicase (154 aa)
       
      0.505
Phatr25
Predicted protein (1589 aa)
       
      0.505
Phatr10821
Predicted protein (73 aa)
     
      0.468
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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