STRINGSTRING
Phatr10954 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr10954" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr10954Predicted protein (209 aa)    
Predicted Functional Partners:
Pt-MAD2
Mitotic checkpoint protein with homology with MAD2 (215 aa)
     
  0.993
Phatr45416
Predicted protein (632 aa)
     
  0.993
Pt-BUB3
WD40 mitotic checkpoint-like protein similar to spleen mitotic checkpoint BUB3 (397 aa)
     
  0.991
APC6
Predicted protein (381 aa)
     
  0.990
Phatr50489
Predicted protein (387 aa)
     
  0.989
Aurora-A
Predicted protein (327 aa)
     
  0.989
APC3
Predicted protein (336 aa)
     
  0.988
Phatr45008
Predicted protein (480 aa)
     
 
  0.988
Phatr12339
Predicted protein (275 aa)
     
 
  0.988
Phatr32412
Annotation not available (800 aa)
     
    0.986
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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