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Phatr11088 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr11088" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr11088Predicted protein (1086 aa)    
Predicted Functional Partners:
Phatr29824
Predicted protein (1177 aa)
   
  0.992
Phatr43097
Predicted protein (671 aa)
   
  0.934
Phatr23547
Predicted protein (479 aa)
   
  0.934
GluRS_1
Glutamate-trna ligase (523 aa)
   
  0.932
Phatr27385
Predicted protein (697 aa)
   
  0.893
Phatr16963
Glutaminyl-trna synthetase (568 aa)
   
  0.893
Phatr47999
Predicted protein (955 aa)
   
 
  0.883
Phatr15186
Predicted protein (959 aa)
   
 
  0.883
Phatr17198
Predicted protein (1052 aa)
   
  0.875
Phatr42051
Predicted protein (579 aa)
   
  0.867
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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