STRINGSTRING
Phatr11197 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr11197" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr11197Predicted protein (93 aa)    
Predicted Functional Partners:
Phatr8310
Predicted protein (77 aa)
 
   
  0.683
Phatr8301
Predicted protein (80 aa)
 
   
  0.683
Phatr48524
Predicted protein (300 aa)
   
        0.532
Phatr42329
Predicted protein (238 aa)
   
        0.529
Phatr7136
Predicted protein (147 aa)
   
          0.523
Phatr41220
Predicted protein (420 aa)
   
          0.523
Phatr16334
Predicted protein (223 aa)
   
        0.516
Phatrdraft1025
Tocopherol cyclase (515 aa)
   
          0.497
Phatr33845
Predicted protein (315 aa)
   
          0.486
Phatr15980
Predicted protein (119 aa)
   
          0.472
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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