STRINGSTRING
Phatr11217 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr11217" - Predicted protein in Phaeodactylum tricornutum
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr11217Predicted protein (340 aa)    
Predicted Functional Partners:
Phatr44382
ATP-dependent Clp protease proteolytic subunit (260 aa)
 
  0.916
Phatr40933
ATP-dependent Clp protease proteolytic subunit (188 aa)
 
  0.915
clpP
ATP-dependent Clp protease proteolytic subunit (214 aa)
 
  0.914
Phatr44232
ATP-dependent Clp protease proteolytic subunit (223 aa)
 
  0.913
Phatr45773
ATP-dependent Clp protease proteolytic subunit (309 aa)
 
  0.911
Phatr10593
ATP-dependent Clp protease proteolytic subunit (199 aa)
 
  0.911
Phatr18202
Lon protease homolog, mitochondrial; ATP-dependent serine protease that mediates the selective degradation of misfolded, unassembled or oxidatively damaged polypeptides as well as certain short-lived regulatory proteins in the mitochondrial matrix. May also have a chaperone function in the assembly of inner membrane protein complexes. Participates in the regulation of mitochondrial gene expression and in the maintenance of the integrity of the mitochondrial genome. Binds to mitochondrial DNA in a site-specific manner (882 aa)
   
 
  0.856
Phatr42361
Predicted protein (380 aa)
     
 
  0.733
Phatr14995
Predicted protein (316 aa)
     
 
  0.733
Phatr14426
Predicted protein (288 aa)
     
 
  0.733
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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